blast-species-identification提供基于BLAST的FASTA序列和OTU表Top ASV的物种注释,支持映射文件、延迟设置和断点续传功能。
Install via ClawdBot CLI:
clawdbot install zd200572/blast-species-identificationGrade Fair — based on market validation, documentation quality, package completeness, maintenance status, and authenticity signals.
Generated May 12, 2026
研究人员从环境样本(如土壤、水体)测序获得OTU表和代表性序列,使用top_asv_blast.py提取每个样本中丰度最高的ASV并自动BLAST比对,快速获取物种分类信息,用于群落组成分析。
临床实验室从患者样本中测序获得未知病原体的FASTA序列,通过blast_annotation_tool.py调用NCBI BLAST进行在线比对,根据高相似性序列判断病原体种类,辅助感染诊断。
食品安全检测机构分析食品样本中的微生物OTU数据,使用top_asv_blast.py对代表性ASV进行物种注释,识别潜在致病菌或腐败菌,追踪污染来源。
农业科研团队长期监测不同耕作方式下土壤微生物群落,利用BLAST物种注释工具对每个样本的优势ASV进行比对,评估施肥或轮作对有益菌群的影响。
提供SaaS平台,用户上传FASTA或OTU表,在云端执行BLAST注释并返回结果,按处理的数据量或序列数收费,也可提供月/年订阅制。
为生物信息学服务公司或大型实验室提供技术咨询、脚本定制和流程整合服务,帮助客户将BLAST注释工具集成到其现有的分析管道中。
基于此工具开发线上或线下培训课程,教授微生物组分析中的物种注释技能,并可颁发证书,面向研究生、技术人员和行业从业者。
💬 Integration Tip
可利用--mapping参数将序列ID映射为样本名,便于与下游统计分析工具整合;使用--skip-existing参数实现增量分析,适合大规模或持续监测项目。
Scored May 12, 2026
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